GgaEX0027491 @ galGal3
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1204937-1270708:-
Coord C1 exon
chr15:1270650-1270708
Coord A exon
chr15:1254652-1254720
Coord C2 exon
chr15:1204937-1205002
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTTATGTTTTTCAGAAA
3' ss Score
9.88
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TCGGCGGCAGCCAGGAAAACCAGCCGAGGGCAGAGAAGCGGGAGAAGGCGGAGGAGATG
Seq A exon
AAATATCCGTAACTTTGATTTCTGCTTTATGAACAAGGGAAGGGACCTAACAACTCACTGAAAAGAGTG
Seq C2 exon
AGTTATCATCGAATCAAGGGAGAATTTCTACTGTAAAGCTGCTGTGAGAAAAGAACACTGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGCCAGGAAAACCAG
R:
TTTACAGTGTTCTTTTCTCACAGCA
Band lengths:
119-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]