GgaEX0027564 @ galGal3
Exon Skipping
Gene
ENSGALG00000004772 | F1N816_CHICK
Description
NA
Coordinates
chr16:351639-367586:+
Coord C1 exon
chr16:351639-351899
Coord A exon
chr16:353086-353118
Coord C2 exon
chr16:367311-367586
Length
33 bp
Sequences
Splice sites
3' ss Seq
GCACTTCTTTCTGTCTGCAGGGT
3' ss Score
10.58
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTCGCACTCCCTGCGCTACTTCCTGACCGGGATGACGGATCCCGGCCCCGGGATGCCGCGGTTCGTGATCGTCGGGTACGTGGACGACAAAATCTTCGGTATCTACGACAGTAAGAGCAGGACTGCACAGCCCATCGTGGAGATGCTGCCGCAGGAGGACCAGGAGCACTGGGCTGCGCAGACCCAGAAGGCCCAGGGCGGTGAGCGGGATTTTGACTGGTTCCTGAGCAGGCTGCCGGAACGCTACAACAAAAGTGGAG
Seq A exon
GGTAGGAGAAGAAGGGTTATGAAGCAGCGCCAG
Seq C2 exon
GGTCTCACACGCTGCAGATGATGTTTGGCTGTGACATCCTGGAGGACGGCAGCATCCGAGGGTACGATCAGTATGCATTTGATGGGAGGGACTACATTGCCTTTGATATGGACACGATGACGTTCACCGCGGCGGATCCGGTGGCAGAAATCACCAAGAGGAGATGGGAGACAGAAGGGACGTATGCTGAGAGATGGAAGCATGAGCTGGGGACTGTCTGTGTTCAGAACTTGAGGAGATACCTGGAGCATGGGAAGGCAGCGCTGAAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004772_MULTIEX1-4/6=C1-6
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(46.1=98.7)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGATTTTGACTGGTTCCT
R:
CTGATCGTACCCTCGGATGCT
Band lengths:
127-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]