GgaEX0027569 @ galGal3
Exon Skipping
Gene
ENSGALG00000001002 | RABEPK
Description
NA
Coordinates
chr17:10312215-10316238:+
Coord C1 exon
chr17:10312215-10312364
Coord A exon
chr17:10314637-10314770
Coord C2 exon
chr17:10316195-10316238
Length
134 bp
Sequences
Splice sites
3' ss Seq
GATCTTGTTTTTGTTCCCAGTGC
3' ss Score
8.34
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
CCGACATGAAGTGGGTTAAGATAGCAGCCACTGGTGATGTGCCAGGAGGACGGGCATCCCACTCATCGGCTGTGTTTAAAGACCACTTATACATTTTTGGTGGAATAGGTCCAGATGGGACACTAGATACTACGTACAAGTATCATATAG
Seq A exon
TGCCTTTGTCTTCAGCTGTGACACGAAGGATTCCATTCACATCTATTTCAAAGGTAACTTCAATCTGTGGGACACCACGAGGAGCAGGAGGGATTCCAGTCAGATCAAAAGTTCCCAGAAGATGATTGTCCTTG
Seq C2 exon
AGTTTGATGAAGTGCTCCATAACACGCTGGTCAAAGTCTTCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001002_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134151=Kelch_3=PD(50.0=49.0),PF134151=Kelch_3=PU(48.0=47.1)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACATGAAGTGGGTTAAGA
R:
GGAGAAGACTTTGACCAGCGT
Band lengths:
194-328
Functional annotations
There are 0 annotated functions for this event