GgaEX0027605 @ galGal3
Exon Skipping
Gene
ENSGALG00000001881 | DNLZ
Description
NA
Coordinates
chr17:8610879-8612207:+
Coord C1 exon
chr17:8610879-8610990
Coord A exon
chr17:8611160-8611272
Coord C2 exon
chr17:8612070-8612207
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGCTGATTTGTCCCCTGTAGGAA
3' ss Score
9.76
5' ss Seq
TGGGTGTGC
5' ss Score
2.34
Exon sequences
Seq C1 exon
GTACAAGCTAGGTGGGTATATACGTGGCTGTGCACATCCTCCTGCCTGATCTCCAGCTCTCTACCTGGCCCAGGAAGGAGGCAGAGGTTCAGCTCAGCCTTCTGTGCAGCAG
Seq A exon
GAAACACATCTGCTTCAGCAGAACTCATTACTGGAGTTTCTGAAGTCCAGGACAGCCTCTCTGGTCAAGCATTCCGCCTCCTGAAGTTTGATCTCTGCTGTCCTCCTCTCTGG
Seq C2 exon
AAAAAACAAAACTGGTGAAGATGTTCCAGGAAATGATCCAGAACAATTTGTGTCATCTCATGACGCAGATGTGACTGCAAAAATGTCCCTTTCCCTATTAAAAGTATTTTAGAAATAAAGAAGATCGAGGCTGCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001881_MULTIEX2-1/3=C1-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGGTGGGTATATACGTGGC
R:
AATGCAGCCTCGATCTTCTTT
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]