GgaEX0027607 @ galGal4
Exon Skipping
Gene
ENSGALG00000001881 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:HGNC:33879]
Coordinates
chr17:7922536-7925582:+
Coord C1 exon
chr17:7922536-7922641
Coord A exon
chr17:7922730-7922884
Coord C2 exon
chr17:7922971-7925582
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTCATGCTCATTCTCTGCAGGTC
3' ss Score
10.3
5' ss Seq
CGGGTGGGG
5' ss Score
3.69
Exon sequences
Seq C1 exon
GCATGCTGGACCGTCCCGTGTGCAGCTGAACCAGGAGCCTCACCAGAAACAATTAGTTCAGCTAAGTTTGATTGATGAGCAGAAGACTTTCTTCCTTCTTTGCAAG
Seq A exon
GTCTCCATATCCCACTAAAGTTAAAGAGGGAGAGCTCCAGCTCCTGCTTTGGAGCTTCTGGCACAACTCTGTACAGGAGCAGCTGAGGAAGTGGAGGGGACAACATACAGCTCTCACTGCAGAGTTTAGAGCAACCCCAGAACAAACTTCAACGG
Seq C2 exon
AAAAAACAAAACTGGTGAAGATGTTCCAGGAAATGATCCAGAACAATTTGTGTCATCTCATGACGCAGATGTGACTGCAAAAATGTCCCTTTCCCTATTAAAAGTATTTTAGAAATAAAGAAGATCGAGGCTGCATTTAACTACCTGCTCTAGGCTCCTCCTTCAGCTGACAGTGTGAGTTCCTGGAGTTTTAGGTGACAAGCAAAAGGACTGCCAAGGTCTTCTTCCCTTGAGCTGTGCCCATTGTTACAGAGGCTGCATCTCCTAAAAAACCCTTGTTTAAAAGCCATCCCCTCCTCTGAACACCAGGTGCAGTGCAGTTGAGGTGCAGATCCTGGGAGAAGTCTGGTGGTGCAGGAGCACTCTGTTTGAAACCACCTACACTTAAGTTCTTTTTGAAAAAACAAATGAAACCAAAACAAACCCCCCAAATCAACCCCGGTTCTTAGCTGGAACCAGGCCTTTGCTGCTCCTCTTCTGCCTCCTCTTGTGCTGAGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001881_MULTIEX2-6/6=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGGAGCCTCACCAGAAA
R:
ACACTGTCAGCTGAAGGAGGA
Band lengths:
254-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]