GgaEX0027616 @ galGal3
Exon Skipping
Gene
ENSGALG00000001347 | F1NLU0_CHICK
Description
NA
Coordinates
chr17:9427153-9433023:-
Coord C1 exon
chr17:9432849-9433023
Coord A exon
chr17:9431715-9431818
Coord C2 exon
chr17:9427153-9430554
Length
104 bp
Sequences
Splice sites
3' ss Seq
GAGGCCTTTCTCCTCCACAGGTC
3' ss Score
10.08
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTTTGGTTCCAAAACTGCCGAGCCCGCCATAAAAAACACACTCCCCAGCACACGGTGCCGCCCTCGGGGCCTCCCCCGCCCCGCATCCCCTCCTCCCTCGCCGAGGACATCCACTATTCGCCCTTCAGCAGCCCGGAGAGGGCCCGCATGGTGACGCTGCATGGATACATTGAGA
Seq A exon
GTCAGGTACAGTGTGGACAAATGCACTGTAGACTTCCCTACACGGCTCCTCCAGTGCACCTCAAAGCAGACATGGAAGGACCGCTATCAAATAGGGGTGAGAAG
Seq C2 exon
GTCATCCTCTTTCAGTACTGACTTCACAAGCTCTTCCTCGCCTACCCATGGCGCTCCCAGCACCACTGCCCCTCAGCCGCTGAAATGCAGTGTCCAGCCCAAGGCAACTGTTCTCAGTCATGCAGGAGAAACTCAGATTCGGCATTCTCGGTTATTCCCATTGACCAGCATCTAACATCCGCTCTTATTTCTCCAGCAACACTCTGTGTATGTGTGTGTCGAGTGCAGAGTTGCATTTTTCACTTGTTTCTTGTGGACTTGTAGAATGACAGTGAGTCTCTCCAAGACAATGCCAAACACAGCCCAAATGAGTGACTCTGCTGTGCTTACAAACCTTGCTCCCCTGCTGTGGGAATACGAACACATCAGTACATGCTGAGTCATGGGGGGTTGGATGATCACCCACGAATATAAAGAAAGGAGGAATTTACGCGGTTTGGCCTGATTCTCTTTTTGCACCAGTGAAGCACTGTTGGTTCCCGGACATCCCTCCTTATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001347_CASSETTE1
Average complexity
S*
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.608 A=0.200 C2=0.212
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(19.3=18.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGACGCTGCATGGATAC
R:
CTCTGCACTCGACACACACAT
Band lengths:
258-362
Functional annotations
There are 0 annotated functions for this event