GgaEX0028137 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4693649-4702967:-
Coord C1 exon
chr23:4702875-4702967
Coord A exon
chr23:4694552-4694594
Coord C2 exon
chr23:4693649-4694170
Length
43 bp
Sequences
Splice sites
3' ss Seq
TAGTGCTTTCCTTTTTACAGTTT
3' ss Score
7.12
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGACCCCCGGCCCCGCGCCCCGGGCTGGGACAGCTGAGGGGGGGCGCAACATGGCGGAGGCCAAGGAGGAGGGGCCCGGCCCCTGCGCCAGG
Seq A exon
TTTGAAGATAAATCTGATGCAGTATTTGATATTACAGAAAAAT
Seq C2 exon
GTAGTGAAATCCTGGATGCAGAAATGTCTGAGGACACTGTCCACAACTTACCAACTGCCCTCGACAGCGTATCTTATGAAATACAGAATCGAGCAGGATCTGAAAACTCACTGCTGGATGATGACGACGATGATGATTATTTTCTGAACTCTGGGGATTTGGCAAGCATACCTGTTGTTGGGAGTGACAACGAAGATGATCAAAATTTCACTCCGAAAGACACTCTCCCATCTGAAGACCATCTGGAAGAGGGCAAGAGGATTACAGAACACGAGCTGGACAGTGAAAAAGATATTCAGATCGAAAATGCAATCCAGAAGGATCTCACTTCACCTTTTGAGCAGGGTCCTGTATTTAAATCAATTCGAAAAGATTTTAGCATAACGAGAGATAATGGCAAAGAGACTTTTTCAACAAAGGACAAGAATAGAGAAGGAAATCTTCAAGAACATGAAAAACGGTTGGAAAAAATCCCTAAAGATACGGATTCTAGATTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.062 C2=0.846
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCAAGGAGGAGGGG
R:
TCAGATCCTGCTCGATTCTGT
Band lengths:
139-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]