GgaEX0028389 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23728276-23736736:+
Coord C1 exon
chr2:23728276-23728329
Coord A exon
chr2:23728879-23728932
Coord C2 exon
chr2:23736629-23736736
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTGCTTCTCTTAACCTGTAGGGT
3' ss Score
10.31
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGTGCCCCAGGTCTGAGAGGTGACACTGGTGCAACAGGAAGAGATGGTGCCCGT
Seq A exon
GGTCTTCCTGGTGCTATTGGTGCTCCTGGCCCTGCTGGTGGTGCTGGTGATCGG
Seq C2 exon
GGTCCTCCTGGTCCTTCTGGTCCTCCTGGTAAGGATGGTCGCAATGGTCTCCCTGGACCCATTGGCCCTGCTGGTGTACGTGGATCTCATGGTAGCCAAGGCCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-25/39=24-39
Average complexity
C2
Mappability confidence:
93%=100=94%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.0=100),PF0139113=Collagen=PU(12.6=61.1)
A:
PF0139113=Collagen=FE(25.0=100),PF0139113=Collagen=FE(19.5=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACACTGGTGCAACAGGAA
R:
TGGCTACCATGAGATCCACGT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]