GgaEX0028612 @ galGal4
Exon Skipping
Gene
ENSGALG00000014419 | SLIT2
Description
slit homolog 2 protein precursor [Source:RefSeq peptide;Acc:NP_001254004]
Coordinates
chr4:74557149-74561860:-
Coord C1 exon
chr4:74561649-74561860
Coord A exon
chr4:74561207-74561295
Coord C2 exon
chr4:74557149-74560560
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGCCTTCTGCAACTGAGAAGCCA
3' ss Score
-2.54
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGTGTGCATGGTACCTGCTTGCCGATCAATGCATTTTCATACAGTTGTAAATGCCTGCAGGGACATGGGGGAGTCCTCTGTGATGAAGAGGAAATGCTGTTTAACCCCTGCCAATCCATCAGGTGTAAACATGGCAAATGCAGGCTTTCAGGACTTGGGAAACCATATTGCGAATGCAGCAGCGGATACACGGGGGACAGCTGTGATAAAG
Seq A exon
CCAAATCCAATGATTCTGCTCCTAGTTTTATCACAAACTCTACTTTTGACCTCTCAGCTTCAACTGATTTATCACAGCGAATTATGCAG
Seq C2 exon
AAATCTCTTGTCGAGGGGAACGAATCCGAGATTACTACCAAAAGCAGCAAGGGTATGCTGCGTGCCAGACGACCAAGAAGGTATCGAGACTAGAATGTAAAGGAGGATGTTCAACCGGGCAGTGCTGTGGACCACTAAGGAGCAAGAGACGGAAATACTCTTTTGAATGCACTGATGGGTCGTCATTTGTGGACGAGATTGAAAAAGTGGTGAAGTGTGGCTGTACAAATTGTCCCTCCTAAGTGTTCCTGTCACACTTGTCTTTTGAAAATGTTGTATACTTATTGACCGTGTCGGACTAATTAATGCTTCATAGTGGAAATATTTGAAATATATTGTAAAATACAGAACAGACTTATTTTTATTATGAGAATAAAGACTTTTTCTTCATTTGAAAAAAGATTCAAGTGCTTGAACTGAGACTTCTCATAATCAAGAGGAGCTTTGAAGAAAAAAAAAGACCTGGTAACATTGCAACAGTGATGGGAAACTTAACTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.867
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=45.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGGAGTCCTCTGTGATG
R:
GGATTCGTTCCCCTCGACAAG
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]