GgaEX0028855 @ galGal3
Exon Skipping
Gene
ENSGALG00000009287 | ATF2_CHICK
Description
NA
Coordinates
chr7:17785262-17797304:+
Coord C1 exon
chr7:17785262-17785373
Coord A exon
chr7:17790919-17790962
Coord C2 exon
chr7:17797236-17797304
Length
44 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTTTTTGTGTACAGGAA
3' ss Score
10.02
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
CGTGACCTGCGTTCCGCCGGGCCCGCGGAGATGTCGGCGGTGCTCTCGCGAGAAGTGACGGAAGCCTGTGGGGGACCCGGCCTTTCATGTGCGGCGCGGCCCGCGTTCCCGG
Seq A exon
GAAACTGAAAAGAAAAAAAAAAGAAGTTGTTGCAGTCCTTCTAG
Seq C2 exon
TTCATTGCCATGAAAAGGAGGATATGATAGTTTGCCCTATGAAACAGATTTATATGTGAAATCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGTCGGCGGTGCTCTC
R:
TCTGTTTCATAGGGCAAACTATCA
Band lengths:
133-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]