GgaEX0028894 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36804781-36818259:-
Coord C1 exon
chr7:36818167-36818259
Coord A exon
chr7:36812123-36812215
Coord C2 exon
chr7:36804781-36804873
Length
93 bp
Sequences
Splice sites
3' ss Seq
CATGGCCATGTTGTCCGCAGGTG
3' ss Score
11.5
5' ss Seq
TCGGTATCT
5' ss Score
3.45
Exon sequences
Seq C1 exon
ATTAAATACAAGGAGAGCATTGGAAAAGGAACTCCAATTCCTGATCTCCCAGAAGTGAAACGTGTCAAGGAGACGCAGAAGCACATCAGCTCG
Seq A exon
GTGTTGTACAAAGAGAATGTGGGGATGGGAACCCCCACCCCTGTCACTCCTGAGATGGAGAGAGTGAAACGCAATCAAGAACACGTTAGCTCG
Seq C2 exon
GTGTTGTACAAAGAACACCTTGCAAAAGGAACCCCAACACCGATGACCCCCGAGATGGAGAGAGCAAAGCGCAACCAGGAAAACATCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=1.000 C2=0.968
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(64.0=51.6)
A:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(59.3=51.6)
C2:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(55.2=51.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCATTGGAAAAGGAACTCCA
R:
TGATGTTTTCCTGGTTGCGCT
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]