GgaEX0028899 @ galGal3
Exon Skipping
Gene
ENSGALG00000012584 | MARCH7
Description
NA
Coordinates
chr7:38326788-38334633:+
Coord C1 exon
chr7:38326788-38327086
Coord A exon
chr7:38330973-38331131
Coord C2 exon
chr7:38334462-38334633
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATAACCATGTTGTTGTCTAGGAG
3' ss Score
6.16
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CCAAAGCTTGGTGTAAATATGTGCATCTGTGTGTGTGCATCATGCTGCATTTAGAAAACACTTGTGCATGTTTTGTATCTAGGTCTCTGCTTCTGAAAGGAAAAAAACAAAACAAAACACAACAGTGTGTCCTTTATTACAGGGTACAAAGAATGGAGTCTAAGCCCTCAAGAATTCCTCGAAGGATATCTGTTCAGGCCCCCAGTTCTACTCTAGGATCTAGAACGTTAACTGGAAACAGTTTAGCTGGTGCATATAGTGCAAGAGATTCTTCACGGAGATTAGACTCTGGATACCAG
Seq A exon
GAGTCTGATGTATTGAGTAGTTCTGACAGAGACTGGGGAATTGGAGAAAGAGAGACTCATGAAAATCCTTGGAAGCTTACAACATCCTCTTCGACTCACTACTCAGGGACACTTGATCACCCACGGTCTGGAAGATTTTTGGGAACCAGAAACAGACTG
Seq C2 exon
TCTACATCTTCCTCCTCTCATTTTACATCTGGGTGTTATGATGATTCTGAAAGAACTCAGGGAGCATATTCAAGACTGCATAGCCAGCAGCAAGATAGTGATTCAAAGCGACCTAAGCTGTCTTGTACATCTACCTCTTCTGTGAGAAGTAATGGCTTGACTGCCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=0.962 C2=0.629
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATATCTGTTCAGGCCCCC
R:
ACAAGACAGCTTAGGTCGCTT
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]