GgaEX0028926 @ galGal3
Exon Skipping
Gene
ENSGALG00000005816 | BCAR3
Description
NA
Coordinates
chr8:14512673-14519816:+
Coord C1 exon
chr8:14512673-14512909
Coord A exon
chr8:14513097-14513316
Coord C2 exon
chr8:14519483-14519816
Length
220 bp
Sequences
Splice sites
3' ss Seq
CCGCTCTTCTTCGGGGCAAGTGT
3' ss Score
0.88
5' ss Seq
AGGGTTTGT
5' ss Score
3.38
Exon sequences
Seq C1 exon
CTTTGCAGTGCTAATCTGGGAGAAGAAATTACGGAAGCCAAGTTCTTAAAGCCGAGGAAAAGGGAGCTGCGGGAGGTCACCGTGCGTACGCGGGAGTGTGCCCCGGCGGCTCTCCGAGGGGCGGGGCGTCGTAAATCAGCGCCCCCGCTGCCCGTGCTGCTCACAGCGCCCGCGGTCGCCGCGCTGTCGGACTCGCGCACGGCCGGGCTCGGGCGGCGCCGCCGCGCAGCTCCCCAG
Seq A exon
TGTTCGCTCCGGCTTCCATCGCGGAAGGGCGAAACCCTGGGCCCTTCGAGAACGCCCCGGGCAGTTACTCCAGTCGCCCCGGCCGCCCTGCGGGCCCGTAGGGAGCCCGGCCGGGAGCGGAGCTGCAGTCGGCCTCCGGGAAGCCGAGCCAGAACAAGAGTGATCGGACCGGCCGCTGCTGGGACGACGTTTTCCTTTGGGGCGGAGAACGACGAGCAGG
Seq C2 exon
AATCAAGAATGATAGCTGCAGGGAAATTTTCAAGTCTTCCCAGAAATGTCCCAGTGAATGTGAACCATCAGTTCTCATTAGCATCGTCTATGGATCTTTTGACCACCAAGCCTTCACTAACTGAGCATCGCTCAGACTCCTTTCAAGACATCTCTATCCATGGCACACTCCCCAGGAAGAAGAAGGGAACAGTTAAAGTTAGGGCTTGTGATATGTTTAGCCATGTGGGAATGTTACCGTACACGAGAACACAAAGGCAACAGCCACCTTTTGTACAGGATGTCATAGAAGAGTACCCTCTACAAAATGGGAAGAGCAACAAACTCCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005816_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.339
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGCCGAGGAAAAGGGAGC
R:
GGCTTGGTGGTCAAAAGATCCA
Band lengths:
303-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]