GgaEX0029042 @ galGal3
Exon Skipping
Gene
ENSGALG00000002429 | C18orf10
Description
NA
Coordinates
chrZ:6628997-6640405:+
Coord C1 exon
chrZ:6628997-6629076
Coord A exon
chrZ:6635853-6636001
Coord C2 exon
chrZ:6640318-6640405
Length
149 bp
Sequences
Splice sites
3' ss Seq
ATACTGTTCTTGCCTTCCAGAAA
3' ss Score
10.05
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
AGACTTCACCAGGTGTTTCTGATGTGACATTAGTGGAAAAGGAGCCAGCTGATCGCCATGCAATTATTTCATGGGAGCAA
Seq A exon
AAAAGGAAGATTCAGAGCAGAATGCCTTTCCAGACATGACTTTTGTGCAGGGACCAGTCATTCCAATTGATGTAGTTCACCTGCTTACAGGAAAAAACCCACTGAAGTCAAGGAAGCTGTCCTCCTATATATTTTTTCTGCTGAGATAG
Seq C2 exon
AAAAACGCCTGCATATTGCCAGAGGATTTAAAGAACTTCTATCTGATGACTGATGGCTTCCAGATGACTTGGAGTGTAAAAATCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002429_MULTIEX1-2/4=C1-4
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.321 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTCACCAGGTGTTTCTGA
R:
CGATTTTTACACTCCAAGTCATCTGG
Band lengths:
165-314
Functional annotations
There are 0 annotated functions for this event