GgaEX0029081 @ galGal3
Exon Skipping
Gene
ENSGALG00000004565 | PHYHD1
Description
NA
Coordinates
chr17:5949800-5950335:+
Coord C1 exon
chr17:5949800-5949958
Coord A exon
chr17:5950176-5950181
Coord C2 exon
chr17:5950260-5950335
Length
6 bp
Sequences
Splice sites
3' ss Seq
TGCTGCTTGGTGGGAAAAAGATG
3' ss Score
-2.3
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTCCGTGAGGATGGTTTCCTTGTCCTGGAGCACTTCTTCAGCCCTGAGGAGTGTGACAGCATGAGGAGCAGCATCCAGAGGATCCTGGATGGGATGGAGGTGCCACCACACTGCCGGACTGAGTTCTCCACCAAGGAAGAGGAGCAGCTCCAGGCACAG
Seq A exon
ATGCAG
Seq C2 exon
GGTAGCTCGGATTATTTCCTCACCAGTGGAGACAAGATCAGGTTCTTCTTTGAGAAGGGTGTTCTGGATGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004565-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.226 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF057218=PhyH=PU(21.0=98.1)
A:
NA
C2:
PF057218=PhyH=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGCCGGACTGAGTTCTC
R:
ACCTGATCTTGTCTCCACTGGT
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event