GgaEX0029082 @ galGal4
Exon Skipping
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8294778-8298203:+
Coord C1 exon
chr10:8294778-8294861
Coord A exon
chr10:8295016-8295018
Coord C2 exon
chr10:8298042-8298203
Length
3 bp
Sequences
Splice sites
3' ss Seq
GTTTATCCCTATGAACTTAGAAA
3' ss Score
3.24
5' ss Seq
AAAGTCCTG
5' ss Score
-14.92
Exon sequences
Seq C1 exon
GTGGAATATCAGTGTGAAGGCTTTCTGGAAAAGAATAAGGATACAGTTTATGAAGAGCAAATTAAGGTCCTAAAATCAAGTAAG
Seq A exon
AAA
Seq C2 exon
TTTAAGCTGCTACCAGAATTATTCCAGGATGAGGAGAAGGCCATCAGTCCCACGTCAGCCACCCCTTCAGGCCGTGTGCCATTGTCTCGAACTCCTGTAAAACCAGCCAAGGCCAGGCCAGGTCAAACTAGCAAGGAGCATAAGAAAACTGTGGGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.9=100)
A:
PF0006316=Myosin_head=FE(0.1=100)
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGTGAAGGCTTTCTGGA
R:
CCTGGAATAATTCTGGTAGCAGCT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]