GgaEX0029192 @ galGal4
Exon Skipping
Gene
ENSGALG00000021273 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr24:5414803-5415266:-
Coord C1 exon
chr24:5415168-5415266
Coord A exon
chr24:5415028-5415038
Coord C2 exon
chr24:5414803-5414945
Length
11 bp
Sequences
Splice sites
3' ss Seq
GCGCTCTCCTGCCTGTGCAGCTC
3' ss Score
8.52
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
CTCAGATTCGCCCAGCCTGCCTCCCCATGCACGGCCAGCGGTTCCAGACCGGCAGGTCCTGCTTCATCACCGGCTTCGGGAAGACCAGGGAGAACGAAG
Seq A exon
CTCTGCAGAAG
Seq C2 exon
ATAACACCTCCCCAAAGCTGCGGGAGGCCGAGGTCAAACTCATTGACTACAAGATCTGCAACAGTGACAAGGTGTACGAGGGCTACCTGACCCCGCGCATGATGTGCGCTGGGTACCTGCAGGGGGGGAAGGATGCGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021273-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.059 A=1.000 C2=0.377
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.4=100)
A:
PF0008921=Trypsin=FE(1.8=100)
C2:
PF0008921=Trypsin=PD(15.2=83.3)
Main Inclusion Isoform:
ENSGALT00000011876fB3745
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGGAAGACCAGGGAGAA
R:
CCCTCGTACACCTTGTCACTG
Band lengths:
108-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]