GgaEX1000063 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C668]
Coordinates
chr28:130438-131169:-
Coord C1 exon
chr28:131069-131169
Coord A exon
chr28:130784-130817
Coord C2 exon
chr28:130438-130611
Length
34 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTTTCTGTGCCAGGAA
3' ss Score
10.18
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
CACACAGAGTGAAATTGCAGTGTGTAAATAGAAGCAAATAAATATAAAAGATCAAAGGCTAGATGGTACAGATATGTACGTATAGAGGAGAAGACTAAAAG
Seq A exon
GAATCTGCAATCACTGAGCACCTGATAAAAATCT
Seq C2 exon
GATGGCACACTCTTTGAATGAATGGCTATGGCAGCACGAGTTCTGGCTCCCCCCAGGAATTACATGGGAGGACATGAAGGAGTCTGAAGACACCCATTATCCAAAGCCTCGTGATCTCCTGCTCAGCATCCCTTTTGCCTTAATCCTGGTTGTCATTCGATGCATCTTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307-'13-7,'13-6,14-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.034
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGAGTGAAATTGCAGTGTGT
R:
GCCATTCATTCAAAGAGTGTGCC
Band lengths:
125-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]