GgaEX1000112 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2678457-2682897:+
Coord C1 exon
chr27:2678457-2678612
Coord A exon
chr27:2680780-2680889
Coord C2 exon
chr27:2682585-2682897
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTCTTTTTAACAAGGTG
3' ss Score
8.15
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CTTCGTGTTTCCGGTGCCTGGTGGATGTGGTGCCGGTGAAGAACGAGGACGGCGTCGTCATCATGTTCATCCTCAACTTTGAGGACCTGGCGCAGCTCATCGCCAAGAGCTCCGGCCGCAGCCTGCATCACCGCCTGTCGCAGAGCTGGCGTGCAG
Seq A exon
GTGAAGGTAGGAGGTTGAAGTTTAGTCTCCCGTCCCTCCGGCGACTCAAAGCCCAGCGGAATTCTCTGCCCACCAGTGAGTTTGATGGAGTAGCCATTGACTATGGAAAG
Seq C2 exon
CCTGGTGGTGACTCCCTGATTTTGAGGGACTTGAAGACATCGCCCAAGGAGAACTGTGTGCAGTCAGAGACCGAATCCCTCCTGGAAAAGGAGAGGAGGCCGAGCCTGGAGGCCGACCCCACCCTACAACACCCGATCCCGAAACAAGAGCCTCCCTCGCTGGGCCCTCGAGGGTCGTACTCTGCGTGGGGTTTCATTCGGTCTCGCCCCGGGGGCAGCTTCCACAGCCTCCGCAGGGTCTCCTCCTTGGACAACTTTGAGGCTGCGAGGTCTGAGTTCCAGAGAAAATTCAGGGAAAGGAGGGCAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505-'2-5,'2-3,3-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.562
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.0=58.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGTCGTCATCATGTTCAT
R:
CTCTTGTTTCGGGATCGGGTG
Band lengths:
257-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]