GgaEX1000114 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2693164-2694386:+
Coord C1 exon
chr27:2693164-2693263
Coord A exon
chr27:2693514-2693801
Coord C2 exon
chr27:2694206-2694386
Length
288 bp
Sequences
Splice sites
3' ss Seq
CCTGTTGTGCTGCCCCACAGACC
3' ss Score
10.75
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GCAGACAGTGTTCCCCGCACACCGCTCAGTGAGGAGTACGACTGCACCTACCGACGTGTGCGCCGACGCAAGCACTCCCTTTGTCAGCCCAACAAGCCCG
Seq A exon
ACCCAGACACGGGCACCTCTGATGCAGAGCAGTATCACACCTACTCAGAGCTCACCAACCCGCAGGATCCGCTGAGTAAGGACCAGTGGGATGACGTGGGCAGCAGCACCACCCCCTGTTCCCAGACCAGTGACGATGAGGCCAAGCCTGGCAGCCCCACAAAAGCTGAGCCCTTCCCCCTGTCCAAAAAGGACGACTTTGCCCTGCCAGCACTCAGCCTCGTCACCGCCAGCGCCAGTGGCACAGAGGTCAGCAAGCAGGCGGCAGAGAGCAGCCAGTCCTATGCAG
Seq C2 exon
CCACCCCCCTGGACATCCCCAATATGTTCACCTTCTGGGAGGATCAAAGGCCAAACCATCACCCGGAGCCCCTACAGCATGTCTCCTTGGTGCACAGCTCACGGGACATCCCCCTGCACAGCGACTACAGACCAGGACAGATTGAGTCCAGGCTGGAGCTCCTGCAGGCCCAGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=1.000 C2=0.590
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGTGTTCCCCGCAC
R:
CTGAGCTGGGCCTGCAGG
Band lengths:
277-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]