GgaEX1000189 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3S1]
Coordinates
chr16:402996-403955:-
Coord C1 exon
chr16:403847-403955
Coord A exon
chr16:403368-403549
Coord C2 exon
chr16:402996-403102
Length
182 bp
Sequences
Splice sites
3' ss Seq
TGTCCAATTCCTCATTTCAGCAT
3' ss Score
7.87
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGTTCCTGGTGCCATGGGACAGGAAGAAGGAGATCCCGTGTGCAGCTCATTGCTGCATGTGCAGCACTGGGAACCCTTAGCCTTGTGCTGGTGCTGGTGATATCGACCG
Seq A exon
CATGTCGGCAGGTCCCTGTGCCACCTTTCCCAGACTTTGCCCACGCGTGCCCCAACGCTTGGGTCGGATTCCAGGGGAAATGCTATTATTTTTCGAAGGAGGAGAATGATTGGAACAGCAGCAGGGAGCACTGCAGTGCCCACGGAGCTTCCCTGGCCTCTATAGACAGTGAAGATGAGATG
Seq C2 exon
GATTTCATGATGCGCTTCCAGGGCCCGGCAAACTGTTGGATCGGGCTGCACAGGGAAGAAGAGGACGCGCAGTGGACGTGGAGCGATGGCACAGCCTTCACCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001131-'2-3,'2-1,3-3
Average complexity
S
Mappability confidence:
86%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(28.1=44.3)
C2:
PF0005916=Lectin_C=FE(36.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCCATGGGACAGGAAG
R:
CAGTTGGTGAAGGCTGTGC
Band lengths:
210-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]