GgaEX1000221 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KYZ6]
Coordinates
chr23:4046181-4046924:-
Coord C1 exon
chr23:4046835-4046924
Coord A exon
chr23:4046520-4046728
Coord C2 exon
chr23:4046181-4046435
Length
209 bp
Sequences
Splice sites
3' ss Seq
GTGAAACCCCTCTCCTGAAGCTG
3' ss Score
3.38
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
GGATAGATGTGGAGATGGAGGCGAGGGACCGCAAGGACCTGTCCCTGCCTGGACATCAGCTGCAGCTGCTGCAGGATGCTGTGCGTGCAG
Seq A exon
CTGCCGGGCACCCCGTCATCCTGCTGCTGTTCAACGCGGGGCCTCTGGATGTGAGCTGGGCGCAGCTGCATGACGGCGTGGGGGCCATCCTGGCCTGCTTCTTTCCTGCTCAGGCCACCGGCCTGGCCATCGCCAGCGTCCTGCTGGGCAAGCAGGGGGCCAGCCCTGCAGGCAGGCTGCCAGCCACGTGGCCTGCAGGCATGCATCAA
Seq C2 exon
GTGCCCCCAATGGAGAACTACACCATGGAGGGTCGGACGTACCGCTACTACGGGCAGGAAGCCCCACTCTACCCCTTTGGGTACGGGCTGTCCTACACCACCTTCCACTACCGGGACCTGGTGCTGAGCCCCCCGGTGCTGCCCATCTGCGCCAACCTCTCCGTGTCGGTGGTGCTGGAGAACACGGGGCCACGTGACAGCGAGGAGGTGAGCGTGGCTGCTCTGCTCGTCCATGGCCACCTGGGGGGCTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001242_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0191517=Glyco_hydro_3_C=FE(13.0=100)
A:
PF0191517=Glyco_hydro_3_C=FE(30.0=100)
C2:
PF0191517=Glyco_hydro_3_C=PD(14.3=38.8),PF143101=Fn3-like=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGGAGATGGAGGCGAG
R:
CTCACCTCCTCGCTGTCACG
Band lengths:
298-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]