GgaEX1000944 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZ87]
Coordinates
JH375197.1:6511-7031:+
Coord C1 exon
JH375197.1:6511-6571
Coord A exon
JH375197.1:6643-6786
Coord C2 exon
JH375197.1:6882-7031
Length
144 bp
Sequences
Splice sites
3' ss Seq
CACGATGGCGTTCACCGCAGCCG
3' ss Score
6.08
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGTCTCACACACTGCAGAAGATGATCGGCTGTGACATCCTGGAGGACGGCAGCATCCGAGG
Seq A exon
CCGATGCGGTGGCAGAAATCACCAAGAGGAGGTGGGAGGAGGAAGGGATATATACTGAGGGATGCAAGCATGAGCTGGGGACCATCTGCGTCCAGAACTTGAGGAGATACCTGGAGCATGGGAAGGCAGCGCTGAAAAGGAGAG
Seq C2 exon
AACGGCCTGAGGTGCGCGTGTGGGGGAAGGAGGCCGACGGGATCCTGACTTTGTCCTGCCGCGCTTATGGCTTCTACCCACGGCCCATTGCCATCAGCTGGATGAAGGACGGCATGGTCCGGGACCAGGAGACCCACTGGGGGGGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004617_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(50.0=94.6)
A:
PF0012913=MHC_I=PD(50.0=94.6)
C2:
PF0765410=C1-set=WD(100=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCACACACTGCAGAAGA
R:
CCCAGTGGGTCTCCTGGTC
Band lengths:
202-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]