GgaEX1001071 @ galGal3
Exon Skipping
Gene
ENSGALG00000004881 | GOLGA2
Description
NA
Coordinates
chr17:5642376-5643414:+
Coord C1 exon
chr17:5642376-5642475
Coord A exon
chr17:5642565-5642653
Coord C2 exon
chr17:5643261-5643414
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCACCTCCCTTCCTTTACAGGGG
3' ss Score
12.29
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GAAAGTCTGGAAGCTGTAGCAAAGGAAAACAAAGAGCTGCAGGCCCAGATCAGTCAGTTAGCAGCAGAGCTGGATGGCAGGATGCTGCACAGACTAGATG
Seq A exon
GGGATGGAGTGGAAAGTGAAGTGATGTCTGAAGAAATGAAAAACCCTTCGTTTGTGATCCCAGAGAAGTTTGAAAGCCAGGAAGAAATG
Seq C2 exon
GTGACTTTCTTGACGTCTGCCATGTCCCAAGTGGAGAAGGAACGAGAAAAGATGAGGCAGCAGTTGGCTGTTCAGAAACAGCAGTGCAGAAACCTCCTGCAGCAAATAGCAGCTCTTCGGCAGGAGCAGCAGCATAACATCACACTGAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.700 C2=0.385
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.2=100),PF087025=Fib_alpha=FE(28.9=100)
A:
PF150701=GOLGA2L5=FE(4.6=100),PF087025=Fib_alpha=FE(25.4=100)
C2:
PF150701=GOLGA2L5=FE(8.1=100),PF087025=Fib_alpha=PD(29.8=65.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACAAAGAGCTGCAGGCC
R:
GGAGGTTTCTGCACTGCTGTT
Band lengths:
173-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]