GgaEX1001163 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:266165-267901:+
Coord C1 exon
JH375182.1:266165-266292
Coord A exon
JH375182.1:266426-266548
Coord C2 exon
JH375182.1:267757-267901
Length
123 bp
Sequences
Splice sites
3' ss Seq
GATAGATTTTATGCTTACAGATA
3' ss Score
4.84
5' ss Seq
CAGGTGGCT
5' ss Score
2.97
Exon sequences
Seq C1 exon
TTGCACCTCTGATTGGAATAAGCCCAGCCACAGCCAATGTAATCGAGGGGCAGCAGCTCACTTTGCCATGTGTTCTACTTGCTGGAAACCCCATTCCAGACCGGAAGTGGATTAAGAACAGTATGGTG
Seq A exon
ATAAAGGTCTATCTTGAAATTGGACTAGCTCACTGAAAACAAGGATCCAGTGGCATTGCAATGACTTCACAACTGACCAACACCACTCAATGAAAGAGCTGCTGCCTGACCAGGAGAAGCCAG
Seq C2 exon
CTGGTTTCCAATCCCTACATTAATGTTCGAAGTGATGGGAGCCTGCATCTTGAAAGAGTTCGGCTGCAGGATGGGGGTGATTATACCTGCATGGCCAGTAATGTTGCTGGGACAAACAACAAAACCACTACTGTTAATGTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(45.5=93.0)
A:
NO
C2:
PF0767911=I-set=PD(52.3=93.9)
Main Inclusion Isoform:
ENSGALT00000008254fB3895
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAATAAGCCCAGCCACAG
R:
GGTTTTGTTGTTTGTCCCAGCA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]