GgaEX1001164 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:368602-369559:+
Coord C1 exon
JH375182.1:368602-368721
Coord A exon
JH375182.1:368952-369086
Coord C2 exon
JH375182.1:369446-369559
Length
135 bp
Sequences
Splice sites
3' ss Seq
CAACTTCTCTTTACCTGCAGATG
3' ss Score
11.2
5' ss Seq
AGGGTACGG
5' ss Score
7.86
Exon sequences
Seq C1 exon
ATGAAGATGAATGTGCTGTGCGAAATCCCTGTTCCCACACCTGCCACAATGCTGTAGGAACCTACCACTGCTCCTGTCCAAAGGGCCTCACCATTGCTGCAGATGGCAGAATGTGCCAGG
Seq A exon
ATGTTGATGAGTGTGTGCTGGGCAGGCACGCCTGCCACACCGACCAGGATTGCGAGAACAGCGCCGGCTCATACCACTGTGTGCTGCGCTGCAGGACTGGCTTCCGTAGGGCAGTGGATGGGCTCAGCTGCCAGG
Seq C2 exon
ATATTAACGAGTGTCAAGAGTCCAATTCCTGTCATCAGCATTGCATCAATACCGTAGGAAGTTTCCACTGTGGTTGCGATCCAGGATACCAGCTAAAGGGCAGAAAATGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_CASSETTE10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PD(92.7=92.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=94.9),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATGAATGTGCTGTGCGA
R:
GCATTTTCTGCCCTTTAGCTGG
Band lengths:
229-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]