GgaEX1001165 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:369446-370695:+
Coord C1 exon
JH375182.1:369446-369559
Coord A exon
JH375182.1:369882-370007
Coord C2 exon
JH375182.1:370567-370695
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCTTTTGTTTTTTAAATAAGATG
3' ss Score
2.98
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATATTAACGAGTGTCAAGAGTCCAATTCCTGTCATCAGCATTGCATCAATACCGTAGGAAGTTTCCACTGTGGTTGCGATCCAGGATACCAGCTAAAGGGCAGAAAATGCATAG
Seq A exon
ATGTAAATGAATGCAGGCAGAATGTATGCAGGCCTGATCAGCTTTGCAAAAACACCCGTGGTGGCTATAAGTGCATTGAGCTGTGTCCAAATGGAATGACCAAAGCAGAAAATGGAACTTGTATTG
Seq C2 exon
ACATCAATGAGTGCCATGACAGAACCCATCAATGTCACTACAACCAGATCTGTGAGAACATGCAAGGGAGTTACCGCTGTGTGTGTCCAAGAGGGTATCGGTCACAAGGACTTGGAAGGCCTTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_CASSETTE11
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=94.9),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTAACGAGTGTCAAGAGTCCA
R:
CCACACAAGGCCTTCCAAGTC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]