GgaEX1001166 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:269414-271104:+
Coord C1 exon
JH375182.1:269414-269526
Coord A exon
JH375182.1:269905-270031
Coord C2 exon
JH375182.1:270945-271104
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTCCCATAGAGG
3' ss Score
11.19
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
TCCTTCCCATTGTTCAGCATGGACAGCAGATATTCAGCACCATTGAAGGAATCCCAGTAACATTGCCATGTAAAGCAAGTGGAGTTCCTAAGCCATCTATTACTTGGTCTAAG
Seq A exon
AGGAAAGTGTCTCTAATAATGGCATTGGGGGGTTAGCTGTCTGTCACTTTTCAATCATGTCCTTGACAACAAGTCCAGTGAGGAGGACCTCAGCTTTTTTGAGAAATCTGAAAATCAGGCTGAGATG
Seq C2 exon
AAAGGAGAAGTAATTTTTCCCAGCAATGAGAAATTTTCTGCAGGTTCTGATGGAAGTCTCTATGTAGTTTCGCCAGAGGGTGAAGAGACTGGGGAATATGTGTGTACTGCAACAAATGCTGCTGGCTACGCTACACGGAAAGTCCAGCTGACTGTATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(39.1=89.5)
A:
PF0767911=I-set=PD(14.3=50.0)
C2:
PF0767911=I-set=PD(58.6=94.4)
Main Inclusion Isoform:
ENSGALT00000008254fB3896
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCAGCATGGACAGCAGA
R:
CAGCTGGACTTTCCGTGTAGC
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]