GgaEX1001168 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:309273-313058:+
Coord C1 exon
JH375182.1:309273-309386
Coord A exon
JH375182.1:311055-311192
Coord C2 exon
JH375182.1:312972-313058
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCCCAAATTTGTCTTTCTAGAGG
3' ss Score
7.52
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGGGTAGAACGCTTCGTTTGACACATACGACTGTATCAGATGAAGGGCACTATACATGTGTGGTGACCAACGCTGCAGGAGAAGCGAGGAAGGATTTTTATCTTTCTGTTCTAG
Seq A exon
AGGAAAGTTACAGGAATGTGGCCTGATGGCAACACAAAATATTCACCAGCTCCCTGTAAATAAGAGCCATACAGAGATGTCCCAGTGTTGTCTGAATTAGGGTAGGAAGTGCAACAGACCAGACAGTTTTCAGGCAAG
Seq C2 exon
TGCCTCCAGGGATTGTGGATGAAAATAAGCAGGAAGATATGAAAGTGAAAGAGAAGAATAGTGTTACCTTAACATGTGAAGTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(42.4=92.3)
A:
NO
C2:
PF0767911=I-set=PU(27.6=80.0)
Main Inclusion Isoform:
ENSGALT00000008254fB3897
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTTCGTTTGACACATACGA
R:
AGGTAACACTATTCTTCTCTTTCACT
Band lengths:
175-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]