GgaEX1001171 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:346334-347145:+
Coord C1 exon
JH375182.1:346334-346490
Coord A exon
JH375182.1:346669-346790
Coord C2 exon
JH375182.1:346981-347145
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTTTCTTTGTTCAGACT
3' ss Score
8.79
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TTCCTCCAACTATTGCTTCTGGACATACTAATATTACAGTTACCGTAAACATGCAGACCACTTTGCCTTGTGAAGCCACTGGAATTCCCAGGCCAGCAGTTAGCTGGAAAAAGAATGGGCATCTGCTTAGTCTTGACCAGAATCAGAATACTTACAG
Seq A exon
ACTTCTGTCTTCAGGTTCCTTAGTAATCATTTCTCCCACTGTGGATGACACTGCTGTCTATGAGTGCTCTGTGTCAAATGATGCAGGAGAAGATCAAAGAGCAGTTGAGCTCACTGTTCAAG
Seq C2 exon
TACCCCCATCTATAGCAGATGAAGCCACAGATCTCTTGGTAACAAAGCTATCTCCAGTAGTAATTTCCTGCACTGCCTCAGGAGTTCCTGTTCCTTCAGTTCATTGGACTAAAAATGGCGTGAAGTTGCTTCCCAGAGGAGATGGCTACAGAATTCTCCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.262 C2=0.018
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(55.6=94.3)
A:
PF0767911=I-set=PD(43.3=92.9)
C2:
PF0767911=I-set=PU(60.2=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGACCACTTTGCCTTGT
R:
TAGCCATCTCCTCTGGGAAGC
Band lengths:
255-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]