GgaEX1001177 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:293182-301979:+
Coord C1 exon
JH375182.1:293182-293305
Coord A exon
JH375182.1:298700-298796
Coord C2 exon
JH375182.1:301857-301979
Length
97 bp
Sequences
Splice sites
3' ss Seq
GGTTTTTGTTTTCTTCCTAGATT
3' ss Score
8.37
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATTCTGTCTGGGGGCCGAGTCCTGGTGTTGACAAGTGCTCAGATAAGTGACACAGGAAAATATACCTGTGTTGCAGTGAATGCTGCAGGAGAGAGCCAAAGAGATATAGATCTCAGAGTTTATG
Seq A exon
ATTGAAGGAGCTCAAGTACAGGACACTGGCCGTTACACTTGCGAAGCGACAAATGTTGCTGGGAAAACTAAAAAGAACTATAATGTCAATATCTGGG
Seq C2 exon
TTCCACCAAGTATTTATGGTTCAGATGACACCTCTCAGCTGACAGTAATTGAAGGGAGCCTGATAAGCTTGATATGTGAGTCTACTGGCATCCCACCACCTAGTCTTACCTGGAAAAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX10-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(43.8=92.9)
A:
PF0767911=I-set=PD(34.1=90.9)
C2:
PF0767911=I-set=PU(39.1=81.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTCCTGGTGTTGACAAG
R:
CAAGCTTATCAGGCTCCCTTCA
Band lengths:
181-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]