GgaEX1001190 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:352001-361683:+
Coord C1 exon
JH375182.1:352001-352082
Coord A exon
JH375182.1:356968-357138
Coord C2 exon
JH375182.1:361513-361683
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGCCTTTCTCACCAGTGG
3' ss Score
8.84
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
AATGAAGATGCTGGTGACTACAAATGTGTGGCAACCAATGATGCTGGTGTGGTGGAACGCAGTCTAACACTCACCCTTCAGA
Seq A exon
TGGACGGGAAGTGGGCCCCATGGGGCAGCTGGAGCGCCTGCACTGTGTCCTGTGGGGGAGGCAGCAGTCAGAGGACACGCCAATGCTCAGACCCAGCCCCACAGTTTGGAGGTCACAGATGTGAAGGAAACAACATACAAGTTGATTTTTGCAACAGCGATCCTTGTCCCA
Seq C2 exon
TGAATGGAAACTGGGGGCCATGGCAGACATGGAGCCAGTGCTCTGCTTCTTGTGGCGGAGGAGAGCAGACTCGAACACGCCTGTGCAGCAATCCTGCCCCGCTATATAATGGTCATCCTTGTCCTGGAGACTCTTCCCAAATATCCAGGTGTAATAGTCAAGCATGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX4-4/10=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(28.4=89.3)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0009014=TSP_1=WD(100=87.9),PF074747=G2F=PU(0.5=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACTACAAATGTGTGGCA
R:
CAGGACATGCTTGACTATTACACCT
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]