GgaEX1001200 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:216187-220139:+
Coord C1 exon
JH375182.1:216187-216257
Coord A exon
JH375182.1:219352-219510
Coord C2 exon
JH375182.1:220017-220139
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCTAATTGTAAACAGGGT
3' ss Score
7.54
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GAATTGGTCCGGTGACGATAACCACAGATCCCAAAAAATTTCAGTTTGAACTCAGGGAGCTTTATGTTCAG
Seq A exon
GGTGGTGGAGACTGTCCAGAGATGAGCATTGGAGCAATTAAAATTGCTCTAGAAATCTCTCTTCCTGGTTCTTTCATCTATGTATTTACTGATGCACGATCCAAAGACTATAGACTCACCCATGAAGTACTTCAGCTCATTCAACAGAAGCAGTCACAG
Seq C2 exon
GTAGTATTTGTGCTAACTGGAGACTGTGATGACAGAGATCATATTGGTTACAAAGTCTATGAAGAAATTGCCTCAACAAGCTCTGGTCAAGTTTTTCACTTAGACAAAAAGCAAGTTAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX7-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(13.4=100)
A:
PF135191=VWA_2=FE(30.2=100)
C2:
PF135191=VWA_2=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACGATAACCACAGATCCC
R:
AACTTGCTTTTTGTCTAAGTGAAAAA
Band lengths:
178-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]