GgaEX1001203 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:278713-280267:+
Coord C1 exon
JH375182.1:278713-278843
Coord A exon
JH375182.1:279507-279657
Coord C2 exon
JH375182.1:280141-280267
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTGGGTTCTTTTAAGGTT
3' ss Score
9.08
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
TTCCTCCTGAAATTAGAGATCAAGAAAGGGTGACAAATACATCTGTAGTTGTTAATCATCCTATAAGTCTCTTCTGTGAAGTATTTGGAAATCCATTCCCAGTCATCTCCTGGTATAAAGAAGATATCCAG
Seq A exon
GTTGTGGAAAGCAATACTCTCCACCAGATTTTGCACAATGGAAAGATACTGAAGCTCCTTAAAGCTACTGTTGATGATGCTGGGCAATACTCATGCAAAGCCATAAATGTAGCAGGAAGCTCTGAGAAGCTCTTTAACCTGTATATACTAG
Seq C2 exon
TTCCTCCCAGTATAATAGGTGCTGATACCCCCAGTGAAATTGCAGTCATCCTCAACCAGGAAACGAGTCTGGAATGCAGAGCCAAAGGCTTTCCTTTTCCTGGCATTCACTGGTTCAAAGACAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX8-2/6=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(43.8=88.6)
A:
PF0767911=I-set=PD(53.9=94.1)
C2:
PF0767911=I-set=PU(40.7=81.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCAAGAAAGGGTGACAA
R:
GCTGTCTTTGAACCAGTGAATGC
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]