GgaEX1001207 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:283552-285567:+
Coord C1 exon
JH375182.1:283552-283830
Coord A exon
JH375182.1:284398-284679
Coord C2 exon
JH375182.1:285459-285567
Length
282 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTTCCTTTCTACAGTTC
3' ss Score
10.35
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
TTCCTCCTAGTATTAAAGGAGGCAATATTACTACAGAGGTATCAGCACTTCTTAACAATCTTATAAATCTGGATTGTGAAACCAAGGGAATCCCTGTTCCTACCATTACCTGGTACAAAGAAGGACGCCGGATTATTTCCAGCCCCCAAGCTTTATATGTGGACAGAGGGCAGTTCCTGCAAATACCTCATGCCCAAGTGTCAGATTCTGCAAAGTACACCTGCCATGTGACCAATGCTGCTGGAGCTGCTGAGAAAACATATGAGGTGGATGTCTATG
Seq A exon
TTCCTCCAGTAATAGAGGGCGATGCTGAAACAGCTCAGAGCAGACAGGTGGTTGCTGGCAATTCACTAACTTTAGAATGTAAAGCTGCTGGCAACCCTTCTCCTCTCCTTACCTGGCTAAAGGATGGTGTGCCTGTGAAAGCAAGTGACAACCTCCGTGTTGTGTCTGGTGGGAAGAAGCTGGAGATCCTCAATGCTGTTGAAGCTGACCGAGGCCAGTATTTGTGTGTTGCCACAAGCATAGCTGGAGAACAAGAAATCAAGTATGGAGTTGAAATCCTAG
Seq C2 exon
TCCCACCGTTTGTGGAAGGTGGGGATGAATTCTTGGACTACATTGTGGTTCTCCATAGCCCTTTGGAGTTGGATTGTTCAGCAACAGGGACACCTTTACCAACAATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX8-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=90.4)
A:
PF0767911=I-set=WD(100=89.5)
C2:
PF0767911=I-set=PU(30.0=64.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGATTGTGAAACCAAGGGA
R:
GGTGTCCCTGTTGCTGAACAA
Band lengths:
306-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]