GgaEX1002168 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:656172-657996:-
Coord C1 exon
chrLGE64:657684-657996
Coord A exon
chrLGE64:656981-657023
Coord C2 exon
chrLGE64:656172-656501
Length
43 bp
Sequences
Splice sites
3' ss Seq
AAACCATTTGTCACCCACAGATG
3' ss Score
9.31
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCTTTCCAAGTCAGGCTGGTGAATGGCCCTGACTCCTGCACGGGGCGGCTGGAGGTGTTCTACAACAGCACCTGGGGGACGGTGTGTGATGACCACTGGAACCTTGCAGGAGCCCATGTGGTGTGCCGGCAGCTGGACTGTGGGATGGGGCTGTCTGCCATTGGTGGGGCTCGGTATGGCCGAGGAAAGGATCCCATCTGGTTGGACAACGTGCAGTGCACTGGGATGGAAGCTGCTCTTTCCGAGTGCAGGGCACGGCCCTGGGGAAACCACAACTGTGGGCATGGAGAGGATGTCAGTGTTGTGTGCTCAG
Seq A exon
ATGTTTCAGATGAATGCCCAGCAAAGTTCCTGATCAGTTGCTG
Seq C2 exon
GGGCACCTGCTCCAGGTGAGATCCAGGTCAGGCTGATAAACGGCTCAAGCTCTTGCTCTGGCAGAGTGGAAATCTTCCACAATGGCAGCTGGGGCACGGTGTGTGATGATGGCTGGAATATGGCGGCTGCTGAAGTGGTGTGCAGAGAAATGGGCTGTGGCTCAGCTCTGTCAGCCCCCGTTGGGGCTACTTTTGGGCAAGGGGCAGGACAAATTTGGATGGATGATGTGACCTGTGCTGGGACGGAGGCTGCCCTTTCTCTGTGCCAGGTCAGTTCCTGGGGAAGCCACAATTGTGGCCACAGAGAGGATGCTGGTGTTGAATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.3)
A:
NO
C2:
PF0053013=SRCR=WD(100=88.3)
Main Inclusion Isoform:
ENSGALT00000014816fB4038
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGGAAGCTGCTCTTTCC
R:
GCTTGAGCCGTTTATCAGCCT
Band lengths:
141-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]