GgaEX1002194 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24077214-24078931:+
Coord C1 exon
chr1:24077214-24077367
Coord A exon
chr1:24077541-24077643
Coord C2 exon
chr1:24078870-24078931
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTGTTCATTCTTAGAGA
3' ss Score
9.23
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAAGAGTCACCTAAATGGGAAGAAGAGGAAGAACAGGAGAAGGAAGATACTGGTGAGAAGCTACAGACTACAGTTTTTGAGGGTGTGAAAAATTCTGTTTGTAGTATTAACCATCAAGTCCATAATGCTTCAGAAGACACTGCTAATGAGAGAA
Seq A exon
AGATCACAAATTGTGGTGCTGGATTCCAAATGATTATGTATGAAGCAAGTTCCTTTCTTAATTTTGTTGCTGTGTTCTCCTTGAAGTGGTCCGAACAAAACAA
Seq C2 exon
GTACTCTGCCAGCAATAGGAGCACAGCAAGAGAAAGAGTCTGAATCTCCCTGGGATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACCTAAATGGGAAGAAGAGGA
R:
TCAGAATCCCAGGGAGATTCAGA
Band lengths:
211-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]