GgaEX1002196 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24069097-24073690:+
Coord C1 exon
chr1:24069097-24069245
Coord A exon
chr1:24071976-24072026
Coord C2 exon
chr1:24073657-24073690
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCTTAATGGATATAGGAA
3' ss Score
4.82
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
TCTTAGTAATCAACTGGCAGAATATGCAGACTGGGAGAACACAGGGGAAGCTTCTGCAGGTGCTACCCGAGGCATCTCAGTGCCGATGACTCCTCACAAGGCAAGAGCTGCTGGCTTTACGTTGGGTGCACCTGCTGTGGACAGAGGAG
Seq A exon
GAACGCAACAGTCTCCTAAGCAGACACCAAGAACAGGAGAATCAAGGAAAG
Seq C2 exon
CAATAGATGACTTTTCCCAAGGAGACTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTTCTGCAGGTGCTACC
R:
TGAGTCTCCTTGGGAAAAGTCA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]