GgaEX1002278 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19811657-19813762:-
Coord C1 exon
chr9:19813631-19813762
Coord A exon
chr9:19812997-19813007
Coord C2 exon
chr9:19811657-19811785
Length
11 bp
Sequences
Splice sites
3' ss Seq
ATCCACTCGTCTTGTGGCAGTAA
3' ss Score
2.93
5' ss Seq
ATAGTTAAG
5' ss Score
-13.35
Exon sequences
Seq C1 exon
CCTGCAATAGCGGCCGTTGGGGACAGCACTGTGAAAACTCCTGTGCCTGCAATAACAGCGATGGGAGCTGCGATCCTGTCACTGGGTCCTGCTTCTGTGAGCCAGGATTCACTGGGAAACACTGCGAGCAGA
Seq A exon
TAAGTTGCATA
Seq C2 exon
GATGTCCTGAGGGAAGCTTTGGTCCCAGCTGCATGCACAGCTGCCAGTGCCAGAACGGGGCTGCATGTGACCATGTGAGCGGAGCCTGCACGTGCAGTGCTGGATGGACCGGGACCTTCTGCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.8=66.7)
A:
PF0005319=Laminin_EGF=FE(8.1=100)
C2:
PF0005319=Laminin_EGF=PD(34.0=36.4)
Main Inclusion Isoform:
ENSGALT00000015394fB4058
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATAACAGCGATGGGAGC
R:
ACCAAAGCTTCCCTCAGGACA
Band lengths:
108-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]