GgaEX1002279 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19815910-19818201:-
Coord C1 exon
chr9:19818067-19818201
Coord A exon
chr9:19817699-19817824
Coord C2 exon
chr9:19815910-19816038
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTGGGTTTCCTCTGGACAGCTT
3' ss Score
7.46
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CATGCACACCTGGCTTTTATGGGGCTGGTTGCAAACTGAGGTGCAACTGTTCCACCGACGTTTTGTGTGACCACGAGACGGGAGCCTGCAAGCGTCCGTGCCCGCCTGGTTTCCATGGAGAAAAGTGCCATTCCT
Seq A exon
CTTGCCAGCCCGGGAGCTTTGGGGTGGACTGCAGGCAGAGCTGCAGCTGCGGGGGAGCACCGTGTGACCCAGAGACTGGGCGTTGTTTCTGCCCAGCTGGGAAAACTGGTGCCATGTGTGAGAGAG
Seq C2 exon
CCTGCCCTGTTGGATACTACGGACAAAACTGCCAGCTGCCATGCAGCTGCAGCAGTGATGCTCTGTGTCACCACATCACTGGGGAGTGCACGTGTCCCCCCGGCTGGACTGGCCACGACTGCAAGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(28.3=28.3)
A:
NO
C2:
PF126612=hEGF=WD(100=29.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTTTTATGGGGCTGGTT
R:
CTTGCAGTCGTGGCCAGTC
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]