GgaEX1002281 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19860356-19934453:-
Coord C1 exon
chr9:19934349-19934453
Coord A exon
chr9:19880606-19880717
Coord C2 exon
chr9:19860356-19860478
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTGCTTTTCTCAGCAC
3' ss Score
7.73
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
TGCTCTGTGCTGCTGACACTTGCTTCAATGGAGGGAAGTGTTCTGAAGAAGGACCTCACATGTGCCAGTGTCCTGCGGGATTTCAGGGTCCTCGCTGCCAGTATG
Seq A exon
CACTATGTAGATGCCCCAATCACGAACAGATCATTGCAAACCCTGACCAAGGAGGGAGTAGAGATAACACCAAATGGTGCAACAGCTGCTGACTCCGTTTCTGCTCTCTAGT
Seq C2 exon
ATGTAAATGAGTGCAGCACTGAGAACGGAGGCTGTCAGGACCAGTGCTGTAACACCATCGGCAGCTACCACTGCAAATGTCCAGCTGGCCAGAAACTGGGGGAAGATGGAAAATCGTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=86.1)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Inclusion Isoform:
ENSGALT00000015394fB4059
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGTGCTGCTGACACTTG
R:
TCCGCACGATTTTCCATCTTCC
Band lengths:
226-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]