GgaEX1002322 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C1A5]
Coordinates
chr6:30873783-30875001:+
Coord C1 exon
chr6:30873783-30873824
Coord A exon
chr6:30874285-30874404
Coord C2 exon
chr6:30874684-30875001
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTATCCTCTTGGTTTGCAGGAC
3' ss Score
10.65
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CTGTAGATCCACCGAATACGACAGACTGGCCCCCTTCAATAG
Seq A exon
GACTGAGTGCCACCATACCATACCATACCACATCAATCCCCCCCATAGTGGAGACAAGTGCCTCAGTACCAGAGATATCGTTGGCAGAGACGAGCTCCCCAGTGGAGATCAGCCCGGCAG
Seq C2 exon
GAACCGGTCTCCACCTGGTCAATGGAAGGCACAGATGTGAGGGCCGTGTAGAGCTGTATTATGAAGGCCAGCTGGGGACGGTCTGTGATGACCTCTGGGACCTCGCTGATGCCCAGGTTGTGTGCAGGCAGCTGGGATGTGGCCAGGCCATTGCAGCTCCGGGCAGTGCTTACTTTGGCCACGGCTCAGGCAGCATCCTGCTGGACGACGTGCGGTGCCAGGGAAATGAGCTGGCCTTGCAGCAGTGCAGTCACATTGGATGGGGGAGACACAACTGCCGCCACCATGAAGATGCTGGTGTTGTCTGTTCAGGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009588_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
75%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
ENSGALT00000015621fB4070
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACTGGCCCCCTTCAATA
R:
CAGCTCATTTCCCTGGCACC
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]