GgaEX1002323 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C1A5]
Coordinates
chr6:30903324-30904618:+
Coord C1 exon
chr6:30903324-30903401
Coord A exon
chr6:30903944-30904003
Coord C2 exon
chr6:30904526-30904618
Length
60 bp
Sequences
Splice sites
3' ss Seq
AACCTCTTCTGTTTGCTCAGGTT
3' ss Score
6.82
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AGCCACCTTCTACATCCACTGTTGTCTCAGAGGAAAGTGCCACATCACCTACTGAAATCCCAGGCACAACTTATGAAG
Seq A exon
GTTCCACCTTCACTACAGAGGAAGATAGGACACCAGAAATCACTACTGTGATACATGAAG
Seq C2 exon
TCTCTGAAAGCTCAACAGAACCAACATCATCCATCCCACTTGTAGAAGACAGTGTGACCTCAGCTCCTGAAATCCCTTCCACAGCTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009588_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
75%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAGAGGAAAGTGCCACA
R:
AGGGATTTCAGGAGCTGAGGT
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]