GgaEX1002546 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P341]
Coordinates
chr7:21629138-21629838:+
Coord C1 exon
chr7:21629138-21629216
Coord A exon
chr7:21629318-21629371
Coord C2 exon
chr7:21629761-21629838
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCACCTCTGCTGCCTTGCAGGAT
3' ss Score
9.5
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTCGTCTGCGGTGGATGAGTCGTGCCAGTCCCTCCTGTCCCACTCAGACATCAGCTATGACCGCACTGAGGATGATGTG
Seq A exon
GATGTTGACGTGATGGTGGTGCGGGCTCTGAAGCGCAAGGCCCAGGAGAGACAG
Seq C2 exon
CGCCTGTCCCTGGCCCCTCAGGTTGGCCCCGTGGTTGTGGCGAAGCGGCACCGTTCTTCTGTGGCACCCTCCAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011252_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.278 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGAGTCGTGCCAGTC
R:
CTGGAGGGTGCCACAGAAGAA
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]