GgaEX1002621 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWS8]
Coordinates
chr2:42168444-42170569:+
Coord C1 exon
chr2:42168444-42168506
Coord A exon
chr2:42170228-42170368
Coord C2 exon
chr2:42170534-42170569
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTAACTAACAGAGA
3' ss Score
8.44
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GGTAATGCTGGCACACCAGGTTCCCTGGGAGATCCAGGGGACCAAGGACCATCAGGACCCATG
Seq A exon
AGACTGCTGTTTAGGAAGGAGATCCAATTCAGATGGATACTGGTCCTCGAGAGTGATAGGTAGTGAGCATTTATAATAACAAGGAGACGAATGTACTGAGAAACAGGCTGGACTGGTAGTCTGCAAGTCTTTTGGGATCAG
Seq C2 exon
GGTGCCAAGGGACAAAGAGGCACTGTTTTAATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.150 C2=0.667
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(32.3=100)
A:
NO
C2:
PF0139113=Collagen=PD(12.9=66.7)
Main Inclusion Isoform:
ENSGALT00000018866fB4122


Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAATGCTGGCACACCA
R:
TCCATTAAAACAGTGCCTCTTTGT
Band lengths:
98-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]