GgaEX1002792 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34717983-34719008:-
Coord C1 exon
chr7:34718901-34719008
Coord A exon
chr7:34718179-34718283
Coord C2 exon
chr7:34717983-34718087
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCTTCTTTGATACAGAGG
3' ss Score
7.12
5' ss Seq
GATGTATGT
5' ss Score
6.31
Exon sequences
Seq C1 exon
CTGAAATATAAAGAAGCTTATGAACATATGAAAGCTAAAGGCTACACCCTGGGACCTAACGATGTTGGGTTTGAAAATGTGAAGAAAGTGAATCAAGTCATTAATGAG
Seq A exon
AGGTTGTATCGGGCAACGTACCACAAGAACAAGGATAAGATTCATACTACTCCAGACACACCAGAAATCCGTCAAGTCAGAGCAACGCAGGAAGCTGTCAGTGAT
Seq C2 exon
TTGATCTACAAATCAGATTTCTTTAAGTTGCAAGGACACTTGATTTCCTTGCCGTTTACTCCTCAGGTGTTGCACTGCCGCTATGTTGGGGACATCACAAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'32-30,'32-29,33-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.486 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(53.6=41.7)
A:
PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGCTTATGAACATATGAAAGCT
R:
TCACTTGTGATGTCCCCAACA
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]