GgaEX1002904 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHE5]
Coordinates
chr2:88854443-88855980:-
Coord C1 exon
chr2:88855793-88855980
Coord A exon
chr2:88855296-88855405
Coord C2 exon
chr2:88854443-88854637
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCAATCCTTCTCTGTGACAGCAT
3' ss Score
6.08
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
Exon sequences
Seq C1 exon
GTTTAGCCCAGTCTGGTGCATGGGGTTGCTTTGATGAATTTAACCGCATTGAACTTCCAGTTTTATCAGTAGCTGCTCAGCAGATATATATTGTACTTCAGTGTAAGAAAAATAAGAAACCTCAGTTCATTTTCACTGATGGTGATGTTGTTGACATGGACAGTGAATTTGGCATATTTCTGACTATG
Seq A exon
CATGAAGGAAGTCACCTTCACTCTGATTCACTGACCTCCCAAAGATTTATCTTTGGTACCTATGGACTGGATTGTTTCTGTCAGTGCAGGAGGCAAAGAAACAGGAAAGT
Seq C2 exon
AACCCTGGCTATGCAGGACGACAGGAGCTTCCAGAAAATCTGAAGATTCAGTTTCGTACAGTTGCTATGATGGTGCCTGACCGTGGCATTATTATGCGAGTCAAGCTGGCAAGTGCTGGTTTCCGAGACAACCAAATCCTTAGTCGAAAATTTTATACACTCTACAAGCTCTGTGAAGAGCAGTTATCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013268-'50-54,'50-53,51-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.7=100)
A:
PF127742=AAA_6=PD(9.5=40.5)
C2:
PF127742=AAA_6=FE(27.6=100)
Main Inclusion Isoform:
ENSGALT00000021845fB4175
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGGGGTTGCTTTGATGA
R:
GGTCAGGCACCATCATAGCAA
Band lengths:
254-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]