GgaEX1002933 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L020]
Coordinates
JH375242.1:122453-123576:+
Coord C1 exon
JH375242.1:122453-122536
Coord A exon
JH375242.1:122719-122845
Coord C2 exon
JH375242.1:123466-123576
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAGGAGCTCTTTGCTTGCAGGAG
3' ss Score
4.87
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GCTCCAGTTCAACTTCTGGCTTCCAGCCACGATCATCCCAGCCTGCAGGAGAGCAGCAAAATGGCCTCAGCACATCCAGCTCGG
Seq A exon
GAGCCCGTGAGCTTTGTGGAGGTGGCCGTGTATTTCAGCAGGGAGTAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTGTACCGGGACGTGATGCTGGAGACGTATGAGTCTGTGGCCTCTCTGG
Seq C2 exon
GTCCGTTCCCAGCCCCCAAGCCTGTGGTGATCTCCCTACTTGAAGGAGGGGATGACCCCTGGATCCCAGATGTGCACAGCCCTGAGGCAGTATCAGGAGACTTCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013355_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=0.083 C2=0.816
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000021794fB4182
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTCAACTTCTGGCTTCCA
R:
GCTGAAGTCTCCTGATACTGCC
Band lengths:
188-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]