GgaEX1003052 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375515.1:19706-21757:+
Coord C1 exon
JH375515.1:19706-19992
Coord A exon
JH375515.1:20167-20200
Coord C2 exon
JH375515.1:21221-21757
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGGTTTCATCCACAGCGA
3' ss Score
10.16
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGAACGGCCTTTTCACCCGCCTCCCGGCTCCGGTGTCCGAAGCCATTTCCCTGAATGCGATGGAGGGGAACGTCACCATCTCCCACACCTCAGGCTTGGAGGTGCTCTTCAGTCCCAGCGGGGAGGTGACGTTGACCGTGAGGGCCACTCTGGCCAACCGCCTCTGTGCCCCCTGTGGCAACTTCAATGGGGACGCCCAGGATGACCTGAGGTTGCCCAATGGCCGTGTCGCTGAGAGCATCGCGGAGGTCGTCGATGCCTGGAAAGCCAAGGATTTTGCAGGATG
Seq A exon
CGATTGACACACAAAAGCAAAGGAGGTTATTCTG
Seq C2 exon
CCGCGTCCCCAACCCCGTAAGGATGGAAGTGGAAGCCCCAGTTTACCCCGCTCCGTAACGACGCCACGATGGGGACGGATGCAAGAGGACCCCATGCACTTCTCCTAAATAACTATGCAGAACAATCAGCATTCACTATTTTTTTTTGCCTATGGAGGTAACCAGGCTGAGTTTCCTTGTGCTCCAACGGGGCCCCGTTATGGCGGGAGGTCACGTGACGGCCAAAACTTCAGAATTTCAGAATTTCGGTGGTCACGTGACCTCTGAAATGTTAAAGTTTGGCATTTAAGCGGATAAACGCTTCGATCCGACCTCAAATCGATGAGAAAAATGGGTTTTTTGGGGGGGGTGATTCGATCCCCACGGGACCCACCGATGCTGCAGGGAAGAAATTGAGGCCATCCGACCCAAATCCCACCTCCTTTACCCCCCCCCCCAAAAAAAAACCCCCTCTCTTCCCATTGGATGCCTTCATTATGGCGCTGCCTCTGCTGCTGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014150_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(49.0=78.1)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCTGAGGTTGCCCAATG
R:
TCCACTTCCATCCTTACGGGG
Band lengths:
118-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]