GgaEX1003082 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:75621177-75624121:+
Coord C1 exon
chr1:75621177-75621330
Coord A exon
chr1:75623330-75623508
Coord C2 exon
chr1:75623906-75624121
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTATGCATCAGCAGAGC
3' ss Score
5.11
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATACAATGCTGGATAACGCCTTACGTTGTCTTAAGAATGTTACATTTGATGAGACCAGCCTTTATGTCAAGGCCTTGATGGCTTACGTATTCACACTGACGGAGGATGTGGAGATGAGACAGGAGCTCCTGGATAAGTTAGAGAAAGAAACTG
Seq A exon
AGCATCTGACATCAGATTCCAGTAGTGAAGAATCTTCTTCTATGATTGAGATAGTAGCCTATATCCTTCTGGCTCATGTTTCCAAACCAGACTTTGCTGTCAATGACAGTGCAGTCAGCAAGCTTGTGCACTGGCTCAGTAAACAAAGAAATGCTCTCGGGGGATTTGCTTCCACACAG
Seq C2 exon
GATACAGTCGTTAGCCTGCAGGCCCTGGCTCAGTATGCAGCCCTGATTCCTCATGAGGTCAGAGATGTGAAGGTGACAGTGAAAGGCAAAGAGGCTTCTCCGCTAGAGTTCCATGTGCACAAAAATAATAAGCTAGTCTTGCATCAAGCATCTCTCCTTGAAGTCCCAGGGATGTACACAGTAGAGGCAACTGGCAGTGGCTGTGTCTACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.3=100)
A:
PF076789=A2M_comp=FE(28.0=100)
C2:
PF076789=A2M_comp=PD(5.4=18.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGACGGAGGATGTGGAGA
R:
CTGCCAGTTGCCTCTACTGTG
Band lengths:
257-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]